PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA08G0221300.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 263aa    MW: 27695.5 Da    PI: 8.3552
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA08G0221300.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.41.3e-1395139554
                        HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        h e+Er+RR+++N +f eLr  +P+       +++Ka+ L  Av+YI +L
  ORGLA08G0221300.1  95 HVEAERQRREKLNRRFCELRAAVPTV-----SRMDKASLLADAVDYIAEL 139
                        889**********************6.....4***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.85390139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.26E-1295144No hitNo description
SuperFamilySSF474597.46E-1795155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.6E-1195139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.4E-1795151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-1296145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MDELVLSPSS FSATACFPTL DFEFCEVPNQ WLLGLGHDEL DKDAAASALA AAAASQSASN  60
DDVPRNPPAT TTTTKRRGRK PGPRSGGGGA PPIGHVEAER QRREKLNRRF CELRAAVPTV  120
SRMDKASLLA DAVDYIAELR RRVERLEAEA RRAPLAPSAA AAAAWAAGLG AGAIGRDDLV  180
VRMVGRDAAI LRLTTAAAAA RHAPARMMCA VRALNLAVQH ASVARVGGAT VQDVMVDDVP  240
AALQDEARLR AALLHTLQLA DTT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0039140.0AP003914.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OJ1521_G02.
GenBankAP0046320.0AP004632.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0623F08.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649359.10.0PREDICTED: transcription factor bHLH14-like
TrEMBLI1QLB20.0I1QLB2_ORYGL; Uncharacterized protein
STRINGORGLA08G0221300.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89333130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46760.14e-16bHLH family protein